bioinformatics-list May 2022

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2 discussions

FW: Seminar today 3pm - Joshua Stevenson
by Jeremy Sumner 19 May '22

19 May '22

Dear all, Just a friendly reminder that we have an ANZIAM* seminar this afternoon given by Joshua Stevenson via ZOOM at 3pm. Please see details below. Meeting URL: https://utas.zoom.us/j/88961934178 Meeting ID: 889 6193 4178 Title: Algebraic Models of Circular Genome Rearrangement Abstract: Phylogenetics is the study of evolutionary relationships between present-day organisms. Evolution can occur via a number of mechanisms, and one such mechanism is the application of large-scale genome rearrangement events, in which sections of the genome are broken apart and reattached in a different order or orientation. By considering the possible combinations of rearrangements that could convert one genome into another, we can identify how closely related the organisms are. I will give an overview of genome rearrangement modelling as an applied combinatorial problem, and then present our algebraic framework for modelling genomes. I will discuss some of my recent work in characterising `biologically reasonable' rearrangements and determining how many of these there are for a given number of regions. *ANZIAM (Australia and New Zealand Industrial and Applied Mathematics) is a division of the Australian Mathematical Society Dr Courtney Quinn Lecturer (Mathematics) School of Natural Sciences College of Sciences and Engineering University of Tasmania E: courtney.quinn(a)utas.edu.au<mailto:courtney.quinn@utas.edu.au> This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise.

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FW: ANZIAM local seminar - Joshua Stevenson
by Jeremy Sumner 12 May '22

12 May '22

Please see below for details on phylogenetics talk by Joshua Stevenson (maths Phd candidate) occurring next week on zoom. Cheers Jeremy -----Original Appointment----- From: Courtney Quinn <courtney.quinn(a)utas.edu.au> Sent: Thursday, 12 May 2022 11:52 AM To: Courtney Quinn Cc: SNS-Maths-Academic; SNS-Maths-Postgrad; SNS-Physics-Academic; SNS-Physics-Postgrad Subject: ANZIAM local seminar - Joshua Stevenson When: Thursday, 19 May 2022 3:00 PM-4:00 PM (UTC+10:00) Hobart. Where: https://utas.zoom.us/j/88961934178 Hello everyone, Our second talk of the ANZIAM* local seminar series will be held via Zoom on Thursday 19 May at 3:00pm. Joshua Stevenson, PhD student of Jeremy Sumner and Venta Terauds, is an invited speaker to the 2022 Student Symposium in Combinatorics and has kindly offered to present his talk to us. His title and abstract can be found below. Title: Algebraic Models of Circular Genome Rearrangement Abstract: Phylogenetics is the study of evolutionary relationships between present-day organisms. Evolution can occur via a number of mechanisms, and one such mechanism is the application of large-scale genome rearrangement events, in which sections of the genome are broken apart and reattached in a different order or orientation. By considering the possible combinations of rearrangements that could convert one genome into another, we can identify how closely related the organisms are. I will give an overview of genome rearrangement modelling as an applied combinatorial problem, and then present our algebraic framework for modelling genomes. I will discuss some of my recent work in characterising `biologically reasonable' rearrangements and determining how many of these there are for a given number of regions. *ANZIAM (Australia and New Zealand Industrial and Applied Mathematics) is a division of the Australian Mathematical Society As usual, please get in touch if you would like to present in our seminar series. Kind regards, Courtney Courtney Quinn is inviting you to a scheduled Zoom meeting. Join Zoom Meeting<https://utas.zoom.us/j/88961934178> Meeting URL: https://utas.zoom.us/j/88961934178 Meeting ID: 889 6193 4178 Join by Telephone For higher quality, dial a number based on your current location. Dial: Australia: +61 3 7018 2005 H.323/SIP: 88961934178(a)zoom.aarnet.edu.au<mailto:88961934178@zoom.aarnet.edu.au> [https://zoom.us/account/branding/p/858d91c4-ab9b-4bae-b88b-3c72cf4ae2a3.png]<https://utas.zoom.us/j/88961934178> This email is confidential, and is for the intended recipient only. Access, disclosure, copying, distribution, or reliance on any of it by anyone outside the intended recipient organisation is prohibited and may be a criminal offence. Please delete if obtained in error and email confirmation to the sender. The views expressed in this email are not necessarily the views of the University of Tasmania, unless clearly intended otherwise.

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bioinformatics-list May 2022